• A catalog of microbial genes from the bovine rumen unveils a specialized and diverse biomass-degrading environment 

      Li, Junhua; Zhong, Huanzi; Ramayo-Caldas, Yuliaxis; Terrapon, Nicolas; Lombard, Vincent; Potocki-Veronese, Gabrielle; Estellé, Jordi; Popova, Milka; Yang, Ziyi; Zhang, Hui; Li, Fang; Tang, Shanmei; Yang, Fangming; Chen, Weineng; Chen, Bing; Li, Jiyang; Guo, Jing; Martin, Cécile; Maguin, Emmanuelle; Xu, Xun; Yang, Huanming; Wang, Jian; Madsen, Lise; Kristiansen, Karsten; Henrissat, Bernard; Ehrlich, Stanislav D; Morgavi, Diego P (Peer reviewed; Journal article, 2020)
      Background The rumen microbiota provides essential services to its host and, through its role in ruminant production, contributes to human nutrition and food security. A thorough knowledge of the genetic potential of rumen ...
    • Distinct gut metagenomics and metaproteomics signatures in prediabetics and treatment-naive type 2 diabetics 

      Zhong, Huanzi; Ren, Huahui; Lu, Yan; Fang, Chao; Hou, Guixue; Yang, Ziyi; Chen, Bing; Yang, Fangming; Zhao, Yue; Shi, Zhun; Zhou, Baojin; Wu, Jiegen; Zou, Hua; Zi, Jin; Chen, Jiayu; Bao, Xiao; Hu, Yihe; Gao, Yan; Zhang, Jun; Xu, Xun; Hou, Yong; Yang, Huanming; Wang, Jian; Liu, Siqi; Jia, Huijue; Madsen, Lise; Brix, Susanne; Kristiansen, Karsten; Liu, Fang; Li, Junhua (Peer reviewed; Journal article, 2019)
      Background The gut microbiota plays important roles in modulating host metabolism. Previous studies have demonstrated differences in the gut microbiome of T2D and prediabetic individuals compared to healthy individuals, ...
    • Metagenome-wide association of gut microbiome features for schizophrenia 

      Zhu, Feng; Ju, Yanmei; Wang, Wei; Wang, Qi; Guo, Ruijin; Ma, Qingyan; Sun, Qiang; Fan, Yajuan; Xie, Yuying; Yang, Zai; Jie, Zhuye; Zhao, Binbin; Xiao, Liang; Yang, Lin; Zhang, Tao; Feng, Junqin; Guo, Liyang; He, Xiaoyan; Chen, Yunchun; Chen, Ce; Gao, Chengge; Xu, Xun; Yang, Huanming; Wang, Jian; Dang, Yonghui; Madsen, Lise; Brix, Susanne; Kristiansen, Karsten; Jia, Huijue; Ma, Xiancang (Peer reviewed; Journal article, 2020)
      Evidence is mounting that the gut-brain axis plays an important role in mental diseases fueling mechanistic investigations to provide a basis for future targeted interventions. However, shotgun metagenomic data from ...
    • Network of Interactions Between Gut Microbiome, Host Biomarkers, and Urine Metabolome in Carotid Atherosclerosis 

      Li, Rui-Jun; Jie, Zhu-Ye; Feng, Qiang; Fang, Rui-Ling; Li, Fei; Gao, Yuan; Xia, Hui-Hua; Zhong, Huan-Zi; Tong, Bin; Madsen, Lise; Zhang, Jia-Hao; Liu, Chun-Lei; Xu, Zhen-Guo; Wang, Jian; Yang, Huan-Ming; Xu, Xun; Hou, Yong; Brix, Susanne; Kristiansen, Karsten; Yu, Xin-Lei; Jia, Hui-Jue; He, Kun-Lun (Peer reviewed; Journal article, 2021)
      Comprehensive analyses of multi-omics data may provide insights into interactions between different biological layers concerning distinct clinical features. We integrated data on the gut microbiota, blood parameters and ...
    • The genetic basis for ecological adaptation of the Atlantic herring revealed by genome sequencing 

      Barrio, Alvaro Martinez; Lamichhaney, Sangeet; Fan, Guangyi; Rafati, Nima; Pettersson, Mats; Zhang, He; Dainat, Jacques; Ekman, Diana; Höppner, Marc P.; Jern, Patric; Martin, Marcel; Nystedt, Björn; Liu, Xin; Chen, Wenbin; Liang, Xinming; Shi, Chengcheng; Fu, Yuanyuan; Ma, Kailong; Zhan, Xiao; Feng, Chungang; Gustafson, Ulla; Rubin, Carl-Johan; Almén, Markus Sällman; Blass, Martina; Casini, Michele; Folkvord, Arild; Laikre, Linda; Ryman, Nils; Lee, Simon Ming-Yuen; Xu, Xun; Andersson, Leif (Journal article; Peer reviewed, 2016-05-03)
      Ecological adaptation is of major relevance to speciation and sustainable population management, but the underlying genetic factors are typically hard to study in natural populations due to genetic differentiation caused ...
    • The metagenome of the female upper reproductive tract 

      Li, Fei; Chen, Chen; Wei, Weixia; Wang, Zirong; Dai, Juanjuan; Hao, Lilan; Song, Liju; Zhang, Xiaowei; Zeng, Liping; Du, Hui; Tang, Huiru; Liu, Na; Yang, Huanming; Wang, Jian; Madsen, Lise; Brix, Susanne; Kristiansen, Karsten; Xu, Xun; Li, Junhua; Wu, Ruifang; Jia, Huijue (Peer reviewed; Journal article, 2018)