• A catalog of microbial genes from the bovine rumen unveils a specialized and diverse biomass-degrading environment 

      Li, Junhua; Zhong, Huanzi; Ramayo-Caldas, Yuliaxis; Terrapon, Nicolas; Lombard, Vincent; Potocki-Veronese, Gabrielle; Estellé, Jordi; Popova, Milka; Yang, Ziyi; Zhang, Hui; Li, Fang; Tang, Shanmei; Yang, Fangming; Chen, Weineng; Chen, Bing; Li, Jiyang; Guo, Jing; Martin, Cécile; Maguin, Emmanuelle; Xu, Xun; Yang, Huanming; Wang, Jian; Madsen, Lise; Kristiansen, Karsten; Henrissat, Bernard; Ehrlich, Stanislav D; Morgavi, Diego P (Peer reviewed; Journal article, 2020)
      Background The rumen microbiota provides essential services to its host and, through its role in ruminant production, contributes to human nutrition and food security. A thorough knowledge of the genetic potential of rumen ...
    • Distinct gut metagenomics and metaproteomics signatures in prediabetics and treatment-naive type 2 diabetics 

      Zhong, Huanzi; Ren, Huahui; Lu, Yan; Fang, Chao; Hou, Guixue; Yang, Ziyi; Chen, Bing; Yang, Fangming; Zhao, Yue; Shi, Zhun; Zhou, Baojin; Wu, Jiegen; Zou, Hua; Zi, Jin; Chen, Jiayu; Bao, Xiao; Hu, Yihe; Gao, Yan; Zhang, Jun; Xu, Xun; Hou, Yong; Yang, Huanming; Wang, Jian; Liu, Siqi; Jia, Huijue; Madsen, Lise; Brix, Susanne; Kristiansen, Karsten; Liu, Fang; Li, Junhua (Peer reviewed; Journal article, 2019)
      Background The gut microbiota plays important roles in modulating host metabolism. Previous studies have demonstrated differences in the gut microbiome of T2D and prediabetic individuals compared to healthy individuals, ...
    • The genetic basis for ecological adaptation of the Atlantic herring revealed by genome sequencing 

      Barrio, Alvaro Martinez; Lamichhaney, Sangeet; Fan, Guangyi; Rafati, Nima; Pettersson, Mats; Zhang, He; Dainat, Jacques; Ekman, Diana; Höppner, Marc P.; Jern, Patric; Martin, Marcel; Nystedt, Björn; Liu, Xin; Chen, Wenbin; Liang, Xinming; Shi, Chengcheng; Fu, Yuanyuan; Ma, Kailong; Zhan, Xiao; Feng, Chungang; Gustafson, Ulla; Rubin, Carl-Johan; Almén, Markus Sällman; Blass, Martina; Casini, Michele; Folkvord, Arild; Laikre, Linda; Ryman, Nils; Lee, Simon Ming-Yuen; Xu, Xun; Andersson, Leif (Journal article; Peer reviewed, 2016-05-03)
      Ecological adaptation is of major relevance to speciation and sustainable population management, but the underlying genetic factors are typically hard to study in natural populations due to genetic differentiation caused ...
    • The metagenome of the female upper reproductive tract 

      Li, Fei; Chen, Chen; Wei, Weixia; Wang, Zirong; Dai, Juanjuan; Hao, Lilan; Song, Liju; Zhang, Xiaowei; Zeng, Liping; Du, Hui; Tang, Huiru; Liu, Na; Yang, Huanming; Wang, Jian; Madsen, Lise; Brix, Susanne; Kristiansen, Karsten; Xu, Xun; Li, Junhua; Wu, Ruifang; Jia, Huijue (Peer reviewed; Journal article, 2018)