Browsing Brage IMR by Author "Rubin, Carl-Johan"

Now showing items 1-8 of 8

    • An intronic copy number variation in Syntaxin 17 determines speed of greying and melanoma incidence in Grey horses 

      Rubin, Carl-Johan; Hodge, McKaela; Naboulsi, Rakan; Beckman, Madeleine; Bellone, Rebecca R.; Kallenberg, Angelica; J’Usrey, Stephanie; Ohmura, Hajime; Seki, Kazuhiro; Furukawa, Risako; Ohnuma, Aoi; Davis, Brian W.; Tozaki, Teruaki; Lindgren, Gabriella; Andersson, Leif (Peer reviewed; Journal article, 2024)
      The Greying with age phenotype in horses involves loss of hair pigmentation whereas skin pigmentation is not reduced, and a predisposition to melanoma. The causal mutation was initially reported as a duplication of a 4.6 kb ...

    • Comparison of anadromous and landlocked Atlantic salmon genomes reveals signatures of parallel and relaxed selection across the Northern Hemisphere 

      Kjærner-Semb, Erik Nordtorp; Edvardsen, Rolf Brudvik; Ayllon, Fernando; Vogelsang, Petra; Furmanek, Tomasz; Rubin, Carl-Johan; Veselov, Alexey E.; Nilsen, Tom Ole; McCormick, Stephen D.; Primmer, Craig R.; Wargelius, Anna (Peer reviewed; Journal article, 2020)
      Most Atlantic salmon (Salmo salar L.) populations follow an anadromous life cycle, spending early life in freshwater, migrating to the sea for feeding, and returning to rivers to spawn. At the end of the last ice age ~10,000 ...

    • Complex genetic architecture of the chicken Growth1 QTL region 

      Ou, Jen-Hsiang; Rönneburg, Tilman; Carlborg, Örjan; Honaker, Christa Ferst; Siegel, Paul B.; Rubin, Carl-Johan (Peer reviewed; Journal article, 2024)
      The genetic complexity of polygenic traits represents a captivating and intricate facet of biological inheritance. Unlike Mendelian traits controlled by a single gene, polygenic traits are influenced by multiple genetic ...

    • Genomic landscape of divergence in Ballan wrasse (Labrus bergylta) 

      Jansson, Eeva; Ayllon, Fernando; Rubin, Carl-Johan; Casas, Laura; Saborido-Rey, Fran; Furmanek, Tomasz; Brieuc, Marine; Villegas-Rios, David; Quintela, Maria; Edvardsen, Rolf B.; Lille-Langøy, Roger; Glover, Kevin (Dataset, 2025)
      This is the final dataset used in Jansson et al. (2025 study "Genomic landscape of divergence in Ballan wrasse (Labrus bergylta)" published in Molecular Ecology. The READ_ME.txt describes how to open and use the data.

    • Heterochiasmy and the establishment of gsdf as a novel sex determining gene in Atlantic halibut 

      Edvardsen, Rolf Brudvik; Wallerman, Ola; Furmanek, Tomasz; Kleppe, Lene; Jern, Patric; Wallberg, Andreas; Kjærner-Semb, Erik Nordtorp; Mæhle, Stig; Olausson, Sara; Sundström, Elisabeth; Harboe, Torstein; Mangor-Jensen, Ragnfrid; Drønen, Margareth Møgster; Perrichon, Prescilla; Norberg, Birgitta; Rubin, Carl-Johan (Peer reviewed; Journal article, 2022)
      Atlantic Halibut (Hippoglossus hippoglossus) has a X/Y genetic sex determination system, but the sex determining factor is not known. We produced a high-quality genome assembly from a male and identified parts of chromosome ...

    • Moderate nucleotide diversity in the Atlantic herring is associated with a low mutation rate 

      Feng, Chungang; Pettersson, Mats; Lamichhaney, Sangeet; Rubin, Carl-Johan; Rafati, Nima; Casini, Michele; Folkvord, Arild; Andersson, Leif (Peer reviewed; Journal article, 2017)

    • Reconstruction of the birth of a male sex chromosome present in Atlantic herring 

      Rafati, Nima; Chen, Junfeng; Herpin, Amaury; Pettersson, Mats; Han, Fan; Feng, Chungang; Wallerman, Ola; Rubin, Carl-Johan; Péron, Sandrine; Cocco, Arianna; Larsson, Mårten; Trötschel, Christian; Poetsch, Ansgar; Korsching, Kai; Bönigk, Wolfgang; Körschen, Heinz G.; Berg, Florian; Folkvord, Arild; Benjamin Kaupp, Kaupp; Schartl, Manfred; Andersson, Leif (Peer reviewed; Journal article, 2020)
      The mechanisms underlying sex determination are astonishingly plastic. Particularly the triggers for the molecular machinery, which recalls either the male or female developmental program, are highly variable and have ...

    • The genetic basis for ecological adaptation of the Atlantic herring revealed by genome sequencing 

      Barrio, Alvaro Martinez; Lamichhaney, Sangeet; Fan, Guangyi; Rafati, Nima; Pettersson, Mats; Zhang, He; Dainat, Jacques; Ekman, Diana; Höppner, Marc P.; Jern, Patric; Martin, Marcel; Nystedt, Björn; Liu, Xin; Chen, Wenbin; Liang, Xinming; Shi, Chengcheng; Fu, Yuanyuan; Ma, Kailong; Zhan, Xiao; Feng, Chungang; Gustafson, Ulla; Rubin, Carl-Johan; Almén, Markus Sällman; Blass, Martina; Casini, Michele; Folkvord, Arild; Laikre, Linda; Ryman, Nils; Lee, Simon Ming-Yuen; Xu, Xun; Andersson, Leif (Journal article; Peer reviewed, 2016-05-03)
      Ecological adaptation is of major relevance to speciation and sustainable population management, but the underlying genetic factors are typically hard to study in natural populations due to genetic differentiation caused ...