• A gentle tutorial on accelerated parameter and confidence interval estimation for hidden Markov models using Template Model Builder 

      Bacri, Timothee Raphael Ferdinand; Berentsen, Geir Drage; Bulla, Jan; Hølleland, Sondre Nedreås (Peer reviewed; Journal article, 2022)
      A very common way to estimate the parameters of a hidden Markov model (HMM) is the relatively straightforward computation of maximum likelihood (ML) estimates. For this task, most users rely on user-friendly implementation ...
    • A global biogeographic classification of the mesopelagic zone 

      Sutton, Tracey T.; Clark, Malcolm R.; Dunn, Daniel C.; Halpin, Patrick N.; Rogers, Alex D.; Guinotte, John; Bograd, Steven J.; Angel, Martin V; Perez, Jose Angel A; Wishner, Karen F.; Haedrich, R.L.; Lindsay, Dhugal J.; Drazen, Jeffrey C; Vereshchaka, A.; Piatkowski, Uwe; Morato, Telmo; Błachowiak-Samołyk, Katarzyna; Robison, Bruce H.; Gjerde, Kristina M.; Pierrot-Bults, Annelies; Bernal, Patricio; Reygondeau, Gabriel; Heino, Mikko Petteri (Peer reviewed; Journal article, 2017)
    • A global database of nitrogen and phosphorous excretion rates of aquatic animals 

      Vanni, Michael; McIntyre, Peter; Allen, Dennis; Arnott, Diane,L.; Benestad, Jonathan, P.; Berg, David, J.; Brabrand, Åge; Brosse, Sebastien; Bukaveckas, Paul, A.; Caliman, Adriano; Capps, Krista, A.; Carneiro, Luciana, S.; Chadwick, Nanette, E.; Christian, Alan, D.; Clarke, Andrew; Condroy, Joseph, D.; Cross, Wyatt, F.; Culver, David, A.; Dalton, Christopher, M.; Devine, Jennifer, A.; Domine, Leah, M.; Evans-White, Michelle, A.; Faafeng, Bjørn A.; Flecker, Aleksander, S.; Keith, B. Gido; Godinot, Claire; Guariento, Rafael D.; Haertel-Borer, Susanne; Hall, Robert, O.; Henry, Rauol; Herwig, Brian, R.; Hicks, Brendan, J.; Higgins, Karen, A.; Hood, James M.; Hopton, Matthew E.; Ikeda, Tsutomu; JAMES, WILLIAM F.; Jansen, Henrice M; JOHNSON, CODY R.; KOCH, BENJAMIN J.; LAMBERTI, GARY A.; LESSARD-PILON, STEPHANIE; MAERZ, JOHN C.; MATHER, MARTHA E.; MCMANAMAY, Ryan A.; MILANOVICH, JOSEPH R.; MORGAN, DAI K. J.; MOSLEMI, JENNIFER M.; NADDAFI, RAHMAT; Nilssen, Jens Petter; Pagano, Marcello; PILATI, ALBERTO; POST, DAVID M.; ROOPIN, MODI; RUGENSKI, AMANDA T.; SCHAUS, MAYNARD H.; SHOSTELL, JOSEPH; SMALL, GASTON E.; Solomon, Christopher T.; STERRETT, SEAN C.; Strand, Øivind; TARVAINEN, MARJO; TAYLOR, JASON M.; TORRES-GERALD, LISETTE E.; TURNER, CAROLINE B.; Urabe, Jotaro; Uye, Shin-ichi; VENTELÄ, ANNE-MARI; VILLEGER, SÉBASTIEN; WHILES, MATT R.; WILHELM, FRANK M.; WILSON, Henry F.; XENOPOULOS, MARGUERITE A.; ZIMMER, KYLE D. (Peer reviewed; Journal article, 2017)
      Animals can be important in modulating ecosystem-level nutrient cycling, although their importance varies greatly among species and ecosystems. Nutrient cycling rates of individual animals represent valuable data for testing ...
    • A global-scale screening of non-native aquatic organisms to identify potentially invasive species under current and future climate conditions 

      Vilizzi, Lorenzo; Copp, Gordon H.; Hill, Jeffrey E.; Adamovich, Boris; Aislabie, Luke; Akin, Daniel; Al-Faisal, Abbas J.; Almeida, David; Azmai, M. N. Amal; Bakiu, Rigers; Bellati, Adriana; Bernier, Renee; Bies, Jason M.; Bilge, Gokcen; Branco, Paulo; Bui,, Thuyet D.; Canning-Clode, João; Cardoso Ramos, Henrique Anatole; Castellanos-Galindo, Gustavo A.; Castro, Nuno; Chaichana, Ratcha; Chainho, Paula; Chan, Joleen; Cunico, Almir M.; Curd, Amelia; Dangchana, Punyanuch; Dashinov, Dimitriy; Davison, Phil I.; de Camargo, Mariele P.; Dodd, Jennifer A.; Donahou, Allison L. Durland; Edsman, Lennart; Ekmekci, F. Guler; Elphinstone-Davis, Jessica; Erös, Tibor; Evangelista, Charlotte; Fenwick, Gemma; Ferincz, Arpad; Ferreira, Teresa; Feunteun, Eric; Filiz, Halit; Forneck, Sandra C.; Gajduchenko, Helen S.; Monteiro, Joao Gama; Gestoso, Ignacio; Giannetto, Daniela; Gilles, Allan S.; Gizzi, Francesca; Glamuzina, Branko; Glamuzina, Luka; Goldsmit, Jesica; Gollasch, Stephan; Goulletquer, Philippe; Grabowska, Joanna; Harmer, Rogan; Haubrock, Phillip J.; Hean, Jeffrey W.; Jelmert, Anders; Johnsen, Stein Ivar; Malmstrøm, Martin; Velle, Gaute (Peer reviewed; Journal article, 2021)
      The threat posed by invasive non-native species worldwide requires a global approach to identify which introduced species are likely to pose an elevated risk of impact to native species and ecosystems. To inform policy, ...
    • A global-scale screening of non-native aquatic organisms to identify potentially invasive species under current and future climate conditions 

      Vilizzi, Lorenzo; Copp, Gordon H.; Hill, Jeffrey E.; Adamovich, Boris; Aislabie, Luke; Akin, Daniel; Al-Faisal, Abbas J.; Almeida, David; Azmai, M. N. Amal; Bakiu, Rigers; Bellati, Adriana; Bernier, Renee; Bies, Jason M.; Bilge, Gokcen; Branco, Paulo; Bui,, Thuyet D.; Canning-Clode, João; Cardoso Ramos, Henrique Anatole; Castellanos-Galindo, Gustavo A.; Castro, Nuno; Chaichana, Ratcha; Chainho, Paula; Chan, Joleen; Cunico, Almir M.; Curd, Amelia; Dangchana, Punyanuch; Dashinov, Dimitriy; Davison, Phil I.; de Camargo, Mariele P.; Dodd, Jennifer A.; Donahou, Allison L. Durland; Edsman, Lennart; Ekmekci, F. Guler; Elphinstone-Davis, Jessica; Erös, Tibor; Evangelista, Charlotte; Fenwick, Gemma; Ferincz, Arpad; Ferreira, Teresa; Feunteun, Eric; Filiz, Halit; Forneck, Sandra C.; Gajduchenko, Helen S.; Monteiro, Joao Gama; Gestoso, Ignacio; Giannetto, Daniela; Gilles, Allan S.; Gizzi, Francesca; Glamuzina, Branko; Glamuzina, Luka; Goldsmit, Jesica; Gollasch, Stephan; Goulletquer, Philippe; Grabowska, Joanna; Harmer, Rogan; Haubrock, Phillip J.; Hean, Jeffrey W.; Jelmert, Anders; Johnsen, Stein Ivar; Malmstrøm, Martin; Velle, Gaute (Peer reviewed; Journal article, 2021)
      The threat posed by invasive non-native species worldwide requires a global approach to identify which introduced species are likely to pose an elevated risk of impact to native species and ecosystems. To inform policy, ...
    • A holistic and comprehensive data approach validates the distribution of the critically endangered flapper skate (Dipturus intermedius) 

      Garbett, Amy; L. Loca, Sophie; Barreau, Thomas; Biscoito, Manuel; Bradley, Caroline; Breen, Joe; Clarke, Maurice; Ellis, Jim R.; Griffiths, Andrew Mark; Hannon, Gary; Jakobsdottir, Klara; Junge, Claudia; Lynghammar, Arve; McCloskey, Matthew; Minos, George; D. Phillips, Natasha; A. Prodöhl, Paolo; Roche, William; Iglesias, Samuel P.; Thorburn, James; C. Collins, Patrick (Peer reviewed; Journal article, 2023)
      Morphological similarities between skates of the genus Dipturus in the north-eastern Atlantic and Mediterranean have resulted in longstanding confusion, misidentification and misreporting. Current evidence indicates that ...
    • A logistic function to track time-dependent fish population dynamics 

      Jokar, Mahmood; Subbey, Samuel; Gjøsæter, Harald (Peer reviewed; Journal article, 2021)
    • A metapopulation model reveals connectivity-driven hotspots in treatment resistance evolution in a marine parasite 

      Coates, Andrew; Robinson, Nicholas Andrew; Dempster, Tim; Samsing, Francisca; Johnsen, Ingrid Askeland; Phillips, Ben L. (Peer reviewed; Journal article, 2022)
      In salmon aquaculture, the sustainable management of salmon lice (Lepeophtheirus salmonis) is limited by the adaptive capacity of the parasite. This is evident in the repeated evolution of pesticide resistance in the salmon ...
    • A method for estimating dredge catching efficiency for blue crabs, Callinectes sapidus, in Chesapeake Bay 

      Vølstad, Jon Helge; Sharov, Alexei F.; Davis, Glenn; Davis, Brenda (Journal article; Peer reviewed, 2000)
      A winter dredge survey of blue crab (Callinectes sapidus Rathbun) is conducted annually in Chesapeake Bay as a key element of a longterm, bay-wide population dynamics study. Removal experiments are performed routinely as ...
    • A method to automatically detect fish aggregations using horizontally scanning sonar 

      Vatnehol, Sindre; Pena, Hector; Handegard, Nils Olav (Journal article; Peer reviewed, 2018)
      Pelagic fishes are a major source of protein and unsaturated fatty acids, and robust management is critical to avoid overfishing. Fisheries management is often supported by indices from scientific acoustic-trawl surveys, ...
    • A model study of the seasonal and long-term North Atlantic surface pCO(2) variability 

      Tjiputra, Jerry; Olsen, Are; Assmann, Karen Margarete; Pfeil, Benjamin; Heinze, Christoph (Journal article; Peer reviewed, 2012)
      A coupled biogeochemical-physical ocean model is used to study the seasonal and long–term variations of surface pCO2 in the North Atlantic Ocean. The model agrees well with recent underway pCO2 observations from the Surface ...
    • A multi-decade record of high-quality fCO2 data in version 3 of the Surface Ocean CO2 Atlas (SOCAT) 

      Bakker, Dorothee C.E.; Pfeil, Benjamin; Landa, Camilla Stegen; Metzl, Nicolas; O'Brien, Kevin M.; Olsen, Are; Smith, Karl; Cosca, Cathy; Harasawa, Sumiko; Jones, Stephen Daniel; Nakaoka, Shin-Ichiro; Nojiri, Yukihiro; Schuster, Ute; Steinhoff, Tobias; Sweeney, Colm; Takahashi, Taro; Tilbrook, Bronte; Wada, Chisato; Wanninkhof, Rik; Alin, Simone R.; Balestrini, Carlos F.; Barbero, Leticia; Bates, Nicholas R.; Bianchi, Alejandro A.; Bonou, Frédéric; Boutin, Jacqueline; Bozec, Yann; Burger, Eugene F.; Cai, Wei-Jun; Castle, Robert D.; Chen, Liqi; Chierici, Melissa; Currie, Kim; Evans, Wiley; Featherstone, Charles; Feely, Richard A.; Fransson, Agneta Ingrid; Goyet, Catherine; Greenwood, Naomi; Gregor, Luke; Hankin, Steven; Hardman-Mountford, Nick J.; Harlay, Jérôme; Hauck, Judith; Hoppema, Mario; Humphreys, Matthew P.; Hunt, Christopher W.; Huss, Betty; Ibanhez, J. Severino P.; Johannessen, Truls; Keeling, Ralph; Kitidis, Vassilis; Körtzinger, Arne; Kozyr, Alex; Krasakopoulou, Evangelia; Kuwata, Akira; Landschützer, Peter; Lauvset, Siv Kari; Lefevre, Nathalie; Lo Monaco, Claire; Manke, Ansley; Mathis, Jeremy T.; Merlivat, Liliane; Millero, Frank J.; Monteiro, Pedro M.S.; Munro, David R.; Murata, Akihiko; Newberger, Timothy; Omar, Abdirahman; Ono, Tsuneo; Paterson, Kristina; Pearce, David A.; Pierrot, Denis; Robbins, Lisa L.; Saito, Shu; Salisbury, Joe; Schlitzer, Reiner; Schneider, Bernd; Schweitzer, Roland; Sieger, Rainer; Skjelvan, Ingunn; Sullivan, Kevin F.; Sutherland, Stewart C.; Sutton, Adrienne J.; Tadokoro, Kazuaki; Telszewski, Maciej; Tuma, Matthias; Van Heuven, Steven M.A.C.; Vandemark, Doug; Ward, Brian; Watson, Andrew J.; Xu, Suqing (Journal article; Peer reviewed, 2016)
      The Surface Ocean CO2 Atlas (SOCAT) is a synthesis of quality-controlled fCO2 (fugacity of carbon dioxide) values for the global surface oceans and coastal seas with regular updates. Version 3 of SOCAT has 14.7 million ...
    • A new compilation of stomach content data for commercially important pelagic fish species in the northeast Atlantic 

      Pinnegar, John Keith; Goñi, Nicolas; Trenkel, Verena M.; Arrizabalaga, Haritz; Melle, Webjørn; Keating, James; Óskarsson, Guðmundur Jóhann (Journal article; Peer reviewed, 2015-02-13)
      There is increasing demand for information on predator–prey interactions in the ocean as a result of legislative commitments aimed at achieving sustainable exploitation. However, comprehensive data sets are lacking for ...
    • A new goatfish of the genus Upeneus (Mullidae) from Angoche, northern Mozambique 

      Uiblein, Franz; Lisher, Mark (Journal article; Peer reviewed, 2013-09-26)
      A new goatfish, Upeneus saiab n. sp. (Mullidae), is described from six specimens collected off Angoche, northern Mozambique, during a research cruise of the RV Dr. F. Nansen in August 2009. Upeneus saiab n. sp. differs ...
    • A new goatfish of the genus Upeneus (Mullidae) from Lombok, Indonesia and first verified record of U. asymmetricus for the Indian Ocean 

      Uiblein, Franz; White, William T. (Journal article; Peer reviewed, 2015-06-26)
      Upeneus lombok n. sp. is described from two specimens collected off Lombok, Indonesia, at depths of 54–76 m, and one subadult specimen from the local fish market at Tanjung Luar, Lombok. Four specimens of U. asymmetricus ...
    • A new intracellular bacterium, Candidatus Similichlamydia labri sp. nov. (Chlamydiaceae) producing epitheliocysts in ballan wrasse, Labrus bergylta (Pisces, Labridae) 

      Steigen, Andreas; Karlsbakk, Egil; Plarre, Heidrun; Watanabe, Kuninori; Øvergård, Aina-Cathrine; Brevik, Øyvind; Nylund, Are (Journal article; Peer reviewed, 2014-11-22)
      Certain wrasse species (Labridae) are used as cleaner fish in salmon farms on the Norwegian coast, reducing salmon louse intensities. The pathogen repertoire of wrasse in Norway is poorly known, and the objective of the ...
    • A new model for simulating growth in fish 

      Hamre, Johannes; Johnsen, Espen; Hamre, Kristin (Journal article; Peer reviewed, 2014-01-16)
      A real dynamic population model calculates change in population sizes indepen- dent of time. The Beverton & Holt (B&H) model commonly used in fish assessment includes the von Bertalanffy growth function which has age or ...
    • A novel system to quantify intestinal lipid digestion and transport 

      Sæle, Øystein; Rød, Kari Elin Langeland; Quinlivan, Vanessa H; Li, Shengrong; Farber, Steven A (Journal article; Peer reviewed, 2018)
      The zebrafish larva is a powerful tool for the study of dietary triglyceride (TG) digestion and how fatty acids (FA) derived from dietary lipids are absorbed, metabolized and distributed to the body. While fluorescent FA ...
    • A participatory scenario method to explore the future of marine social‐ecological systems 

      Planque, Benjamin; Mullon, Christian; Arneberg, Per; Eide, Arne; Fromentin, Jean-Marc; Heymans, Johanna J; Hoel, Alf Håkon; Niiranen, Susa; Ottersen, Geir; Sandø, Anne Britt; Sommerkorn, Martin; Thébaud, Olivier; Thorvik, Thorbjørn (Journal article; Peer reviewed, 2019)
      Anticipating future changes in marine social‐ecological systems (MSES) several decades into the future is essential in the context of accelerating global change. This is challenging in situations where actors do not share ...
    • A pedigree-based experiment reveals variation in salinity and thermal tolerance in the salmon louse, Lepeophtheirus salmonis 

      Ljungfeldt, Lina; Sanchez, Maria Quintela; Besnier, Francois; Nilsen, Frank; Glover, Kevin (Peer reviewed; Journal article, 2017)